#NEXUS
[ Title A 896 bp segment of mtDNA for five primates from Brown et al. (1982)]
begin taxa;
   dimensions ntax= 4;
   taxlabels
      Human
      Chimpanzee
      Orangutan
      Gibbon
;
end;
begin characters;
   dimensions nchar= 896;
   format missing=? gap=- matchchar=. datatype=nucleotide interleave=yes;
   matrix

[!Domain=Data;]
Human      aagcttcaccggcgcagtcattctcataatcgcccacggacttacatcctcattactattctgcctagcaaactcaaact
Chimpanzee ................a.t..c.................................t......................t.
Orangutan  ................ac..cc.....g..t.....t.....c........cc....g......................
Gibbon     ......t..a..t...ac.g.c....................a..c..t..cc.g...........t.............

Human      acgaacgcactcacagtcgcatcataatcctctctcaaggacttcaaactctactcccactaatagctttttgatgactt
Chimpanzee .t........c.................t.....c................................c...........c
Orangutan  .......a..c.....c.......................c.................c........cc.c.........
Gibbon     .......a........c..............a....g...g..c...g.ct..........g.....c..c........c

Human      ctagcaagcctcgctaacctcgccttaccccccactattaacctactgggagaactctctgtgctagtaaccacgttctc
Chimpanzee ........................c.......t..c.....t..c..a..g........c............t.a.....
Orangutan  ............a.......t...c....a.....c..c.....t..a...........c..a...a..g...ta.....
Gibbon     gc......................c...................c..a..t.......tc..a...a.gg..t.c.....

Human      ctgatcaaatatcactctcctacttacaggactcaacatactagtcacagccctatactccctctacatatttaccacaa
Chimpanzee ...........c............c......t...........a..........g..............g..........
Orangutan  t.....t..c.....ca.......a..................a.....a..........t.....t.....c.......
Gibbon     ...gg....c.ct...a.tac...c..c..g......g.....a....g..............t..........t..t..

Human      cacaatggggctcactcacccaccacattaacaacataaaaccctcattcacacgagaaaacaccctcatgttcatacac
Chimpanzee .......a.......................t........g....................t..t.....a..tt.....
Orangutan  .....c.a..ta...c...a........c..............t..t........c.....t.........c........
Gibbon     .....c.a...a....t..a...........a...............c...............tat.a..ac.t..g...

Human      ctatcccccattctcctcctatccctcaaccccgacatcattaccgggttttcctcttgtaaatatagtttaaccaaaac
Chimpanzee ...........c.....t...........t..t..t.....c..t..a..ca....c.......................
Orangutan  ...........c......t..............ag......cg.t.....cg...ac.......................
Gibbon     ..c.t....c.c.........a..........ta..........t..c...a.tc.c......c.........t......

Human      atcagattgtgaatctgacaacagaggcttacgaccccttatttaccgagaaagctcacaagaactgctaactcatgccc
Chimpanzee .............................c..........................t.t............t....at..
Orangutan  ..t.............a.t..t..g.c.cc..a.........................................tca.t-
Gibbon     ..t.............a....t.......cgaa...t...gc.............c...................ctat.

Human      ccatgtctgacaacatggctttctcaacttttaaaggataacagctatccattggtcttaggccccaaaaattttggtgc
Chimpanzee .....c.......................................c....g.............................
Orangutan  ......g...................g.......................c...........at................
Gibbon     ......a.......................................................a.................

Human      aactccaaataaaagtaataaccatgcacactactataaccaccctaaccctgacttccctaattccccccatccttacc
Chimpanzee ..........................t.t.....c.........t.......a...c..t......t.........c...
Orangutan  ..................c.g.....ttt..c..c.....tg....c...t.a...........c........taccg.t
Gibbon     ....................g.a...t....c..c...g...tt.....g..a..c.................tacag..

Human      accctcgttaaccctaacaaaaaaaactcatacccccattatgtaaaatccattgtcgcatccacctttattatcagtct
Chimpanzee ......a.........................t...........g.........a....g...........c..t..c..
Orangutan  ......a.......c............c..........c.........a.ggcca........g......c......c..
Gibbon     .....ta.......c..t.....g....t......g..c..c......atg.cca.t..c..t........a.....c..

Human      cttccccacaacaatattcatgtgcctagaccaagaagttattatctcgaactgacactgagccacaacccaaacaaccc
Chimpanzee t....................a................c.........a.....g........a................
Orangutan  ta....a...........t..c.......ga......acc..cg..a.a......tg....a.a..c.....g...cta.
Gibbon     a..t.......t.............ac..........acc.....t..a............a.tg..........gctag

Human      agctctccctaagctt
Chimpanzee ................
Orangutan  .a.....a........
Gibbon     .a..............
;
end;