#NEXUS [ Title Gamma fibrinogen data from M J. GATESY] begin taxa; dimensions ntax= 16; taxlabels Dalli_sheep Moose Giraffe Chevrotain Beluga_whale Sperm_whale Finback_whale Hippopotomus Pig Peccary Arabian_camel Asiatic_tapir Przewalski_horse Spotted_hyena Coyote Human ; end; begin characters; dimensions nchar= 651; format missing=? gap=- matchchar=. datatype=nucleotide interleave=yes; matrix [!Domain=Data;] Dalli_sheep AAAGATTTGTAAGTTACTTTTAT----GTTTCTCTC--TGTGTTTGAACTGGACT----TGGGCAGAGAAATTTTTATTC Moose ..............CG.......----.........--.............A..G----.........G..G........ Giraffe .......C......CG.......----.........--.................----.........G........... Chevrotain ..............AG....C..----A........--.............T...----.........G..--------- Beluga_whale ..............AGT......----.......G.--........C.......G----............--------- Sperm_whale ..............AGT......----.......G.--........CG.....TG----............--------- Finback_whale .......C......AGT......----.......G.--........C.......G----............--------- Hippopotomus ?.............AGT.....CT---.......G.--......G.........G----.....?...G..--------- Pig .G............AG.......----.......G.--.........G.....GGGG--A........G..--------- Peccary .G........G...AG.....C.----.G.....GT--G.C...........CG.GGGCG........G..--------- Arabian_camel ?.............CGT....T.GTTC......GG.--................A----G...TG...G..--------- Asiatic_tapir ..............A.T......----......TG.--....C...G......GA----G........GC.--------- Przewalski_horse ..............A.T......----.......G.--...............AA----G........G..--------- Spotted_hyena ..............AGT...C..----.......AT--..........G...GGA----G........G..--------- Coyote ?.............AGT...C..----.......A.--..CA.G....G...GGA----G........G..--------- Human .......C......AGT......----.......C.TT.....G.........GA----G........G..--------- Dalli_sheep CTTATAAGAGATTCTTTAGCAAATATCATTTGAC-AGTTTAGACTTTTT------------------------------- Moose ...........................T....G.-..............------------------------------- Giraffe ................................G.-..............------------------------------- Chevrotain --..A..T.A.....G................G.-........G.....TTT---------------------------- Beluga_whale --..A....A.....C.C..............G.-..............TTTTT?------------------------- Sperm_whale --.......A.....C.C..............G.-..............TTTTTT------------------------- Finback_whale --..A....A.....C.CT......C......G.-..............TTT---------------------------- Hippopotomus --.GA....A.....C.CA.............G.-..............TTTTTT?------------------------ Pig --..A....A.....C.C.......C.G.G..G.CCA............TT----------------------------- Peccary --..G....A.....C.C..G..C.G...C..G.CC.............TTTTTTTT?---------------------- Arabian_camel --..A...GA.....C.C.....G.C......G.-.T.......A..--------------------------------A Asiatic_tapir --..A...GAG....C.CA..C....A.....G.-?T....A...C...TTTT--------------------------- Przewalski_horse --.GA...GA.....C.CAT...........AG.-GT....A...C...TTTTTT??----------------------- Spotted_hyena --..G...GA.....C.CA.............G.-.T.G..A....---------------------------------- Coyote -----------------------.........G.-.T....A.....A.TTTTTATTTATTTACTTATTTTTCATTTTAA Human --..G..ATA....CC.CAT.........C..G.-.C..GTA.......------------------------------- Dalli_sheep --------AAAAACATAGTCTAGGTTTTACCTGTTTTT------ATTTAT------------------------------ Moose --------.......................AA.....------...A..AGAT-CTCA--TGTAGCTTTTT-------- Giraffe --------................?.......A.....------...A..AGAT-CTCA--TGTAGCTTTTT-------- Chevrotain ------AA.........C.......G..-------------------A.GAGAT-ACTA--TGTGGCTTTTA-------- Beluga_whale ----------...TGA................A....G------...AG.AGAT-CTTA--TGTAGCTTTTT-------- Sperm_whale -----------..TG.................A....G------...AGGAGAT-CTTA--TGTAGCTTTTT-------- Finback_whale --------......G.................A....G------...AG.AGAT-CTTA--TGTAGCTTTTT-------- Hippopotomus ----------.......A....................------G..AG.GGAT-CTTA--TGTAGCTTTTT-------- Pig --------....G...............GT..A.....TT---A.ACAG.AGAT-TTCA--GGTAGCTTTTT-------- Peccary ----------..G.......C........T..A.....T----C.AGAG.AGAT-TTTA--GGTAGCTTTTT-------- Arabian_camel AAAAAAAA..CG.A.C....C.T......T..A.....TTTT?A.C.GG.GGAT-TTTA--TGTAGCTTTTT-------- Asiatic_tapir -----------...........CA.....G..A.....------...A..AGAT-TTTAAGTGTAGCTTTT--------- Przewalski_horse -----------...........CA.....G..A.....------...G..AGAT-TTTAAGTATAGCTTTC--------- Spotted_hyena ---AAAAA.................C......A.G...------...AG.AGATATTTA--TGTAATTTT---------A Coyote ACTTAAAA.........A..G.................------...A..GGAT-TTTA--TGCA?GTTTTTTTGTTTGT Human --------........................A.....------C..A..AGAT-TTTAAGAGTAGCATCT--------- Dalli_sheep ------------------------CAGGATTTTTTAA-TCACACT------GTTGTATTTTCAGGGTAGTTATTGCCCAA Moose ----------------------AT...A.-.......-.......ATT---............................. Giraffe ----------------------AT.....-....A..-.......ATT---............................. Chevrotain ----------------------ATTG...-...AA..A...T...ATT------..................C....... Beluga_whale ----------------------TT.....-....A..-G...T..ATT---A............................ Sperm_whale ----------------------AT.....-....A..-G...T..ATT---A............................ Finback_whale ----------------------AT.....-.......-....T..ATT---A............................ Hippopotomus ----------------------AT...?.-.......-....T..ATT---...T........................? Pig ----------------------ATG.AA.-AG.....-....TG.ATTAAAA..A.................C....... Peccary ----------------------ACG.AA.-AA.....-G...GG.ATTAAAA..AC........................ Arabian_camel ----------------------GT..A..-?...A..-....T..GTT---......C..............C.....G. Asiatic_tapir ----------------------AT..A..-...C...-....T..ATT---.....G..................T..T. Przewalski_horse ----------------------AT..A..-...C...-....T..------C?.......C.....C........T..G. Spotted_hyena AAAATTTATCTAGTTTTTAAAAAT..A..-C..C...-....T..A?TC--.C..C........................ Coyote TTGTTTGTTTGTTTGTTTTTGAAT..A..-...C...-....T..ATTC------....C..................G. Human ----------------------GT.TAC.-.......-....T--------...A....................T.... Dalli_sheep CTACCTGTGGAATTGCAGACTTCCTGTCTAATTACCAAACCAGTGTAGACAAGGATCTACGAAATTTGGAAGGCATCTTC Moose ...........G.......T................................A.......A..................A Giraffe ...........G.......?.............................A?........TACCG.......A..GA...A Chevrotain ...................T...........C...........C................AC.........A.......G Beluga_whale ...................T.........?C.............................AG.................A Sperm_whale ...................T..........C...........A.................AG.................A Finback_whale ...................T..........C.............................AG...........A.....A Hippopotomus ...........G.......T................?.......................AG.........A....TG.T Pig ...TG.....G..C....GT..........C........A..C......G..........AG........G......C.A Peccary ....G.....G..CA....T..........C........A..C...C..G........G.AG........G......C.G Arabian_camel ..........C.....G..T..........C........A...C..G...........G.AG.C........A....C.A Asiatic_tapir ...................T........G.C..........?..............T...AGGT......G.A......A Przewalski_horse ...................T........G.................G.............AGG....T....A......A Spotted_hyena ...................T.....A....C..........G.C...?....T.....G..G.C......G.ATC....A Coyote ...........................?..C......G...G.A........T...?.G.AGGC........A.C..C.A Human ..........C........T..........C...T.......AA................AGTC........A......A Dalli_sheep TATCAGGTTGAGAACAAAACATCAGAAGCCACAGAGCTGGTCAAAGCAATCAAGATCAGCTATAACCCTGATGAACCGTC Moose ...............................G...................C.A.......................A.. Giraffe ...............................A...................C.A.......................A.. Chevrotain ...............................G..................TC.A.....................G.A.. Beluga_whale CG...............G.............G....T..............C..........CCG.T......G...AG. Sperm_whale CG...............G.............G....T.........A....C..........CCG.T......G...AG. Finback_whale CG...A...........G.............G....T..............C..........CCG.T......G...AG. Hippopotomus C..G.............G.............GG..................C.A........C..............AGA Pig C....A.................G.......G.......A.......C...C...................A..T.TA.. Peccary C....A.................G..?....A.......A.......C...C.A...........T..C....?G..A.. Arabian_camel C....A..............GA....G....G.......A.......CG..C.A................CC..G..... Asiatic_tapir A....A.C...A...................A...A...A.......C...C.AG....G.....A...........AA. Przewalski_horse C...GA.C...A..TC....C.........GA.C.A...A..C........CGA.C.........T...........AC. Spotted_hyena AG.GG.A....A........C..........A...AT..A.....T.....C.AG.......C..T..AA....G..AC. Coyote AGA.GAA....A.........G.........A...AG..A.....T.....C.A....C......T..C.....G..AC. Human C....A.....A................T..A.C.....A.A.........C.AC...CT.....T.........T.A.. Dalli_sheep AAAGCCAAGTGAGACTCTAACTGCCACTGACTGAGAGAG--------TCATCTATGAAGTGCTTTTGC?GTTATTT-TAG Moose ..............A......CC......C......A..--------.............T.......T.......-C.. Giraffe ..............A.....................A..--------.............T...C...T.......-... Chevrotain ..............A......CA.............A..--------.............T..C...TT.---...-... Beluga_whale ..............A......CA.............ACT--------......G......T.......T..A....-C.. Sperm_whale ..............A......CA.............ACT--------...A..G......T.......T.......-C.. Finback_whale .?............A......CA.............ACT--------......G......T.......T.......-C.. Hippopotomus ..............A...C..-A.TG....T.....ACT--------....G.G......T.......T.......-C?. Pig ...A...G......A...G..CAG.G...C......A.A--------......G..GG..T.......T...G..G-... Peccary ...A...G......A...G..CAG..A..C......A.AA-------......GG..GT.T.......T.C.G..G-... Arabian_camel ..............T......CA..C.C.....G..A.A--------......G?.....T.......T..GG...-... Asiatic_tapir .......G......AA..G.A.A.......G.....A.A--------.A.CT.G......T.......T...G...-... Przewalski_horse ....A..G......AA.GG.A.A....C...G....A.A--------.A..T.G..G.T.T.......T...G...-... Spotted_hyena ..............AA....A.A.T......C....A.A--------.G..T.G...G..TG....?.T...G...-C.. Coyote ..............AA.A..A.A.TG.C.G......C.A--------.G..TC....C..T......?T.CC...GCC.. Human ...A..........AAA...AGA.T......CA.A.A.TAATAATAA.A....G......T.......T...G...-... Dalli_sheep TGGTTCTGTTTGCTTATGTAT--TTT?ATATCTCTGATCCCATATTACAGGTAACATAGAGAGTGCTACCAAGAATTACA Moose .....................--...T.......................A..........................C.. Giraffe .....................--...T..............G..........C........................C.. Chevrotain .......A...A......C..TT...T..G.......C....C.......AC..G................G.....C.. Beluga_whale ............T.C......--...T..G.............G......A.GGG.....A.............T..C.. Sperm_whale ............T........--...T..G...T.........G........GGG......................C.. Finback_whale ............T...C....--...T..G.............G......A.GGG.....C.............T..C.. Hippopotomus ................C....--...T..G.......C...............GG......................C.. Pig .....T....G....GA..?.-T...T..G?......C.....C...T..A..GG...C.A.....C......G.G.C.. Peccary ......CC..GA...GA..G.-TC..T..G...........C.G......AC.GG...C.A.....C.....AG...C.. Arabian_camel CA..............A....--...T..........C...............GG..................G...T.. Asiatic_tapir .......AG..A.C..A...A--...T..G.....A..T..G.........CGGA.....T........T.G.G.G.C.. Przewalski_horse .T...G.A....TC.GA.C.A--G..T..G.....................C.GA.....TGC......T.GAG.G.C.. Spotted_hyena ...C..CA........A..CC--...TG.G..........TGCG......AC.CG....T.............G...C.. Coyote ......CA..........CC.--...T..G....................AC.GGG.C.T.G.........?.G.C.C.. Human .T.....A........A.G..--...T..G..........T.........A..TG.....CGC......TTT...G.C.. Dalli_sheep AGAGAATGATG Moose ........... Giraffe ........... Chevrotain ...A....... Beluga_whale ...A.G..T.. Sperm_whale ...A....T.. Finback_whale ...A....T.. Hippopotomus ...A....?.. Pig ...A....T.. Peccary ...A....T.. Arabian_camel ...A....... Asiatic_tapir ...A....C.. Przewalski_horse ...A....... Spotted_hyena ...A....... Coyote ...A....... Human G..T....T.A ; end;