#NEXUS [ Title : Nucleotide sequences of Mt Cytb gene of 11 vertebrate species] begin taxa; dimensions ntax= 11; taxlabels Finback_Whale Blue_Whale Cow Rat Mouse Opossum Chicken Xenopus Trout Loach Carp ; end; begin characters; dimensions nchar= 1131; format missing=? gap=- matchchar=. datatype=nucleotide interleave=yes; matrix [!Domain=Data property=Coding CodonStart=1;] Finback_Whale ATGACCAACATCCGAAAAACACACCCACTAATAAAAATCGTCAACGACGCATTCGTCGATCTCCCCACCCCATCAAAT Blue_Whale .......................................A.......T......A.T........T...........C Cow .....T.....T.....GT.C.................T..A...A.T......A....C..T..AG..........C Rat .....A............T.T.....C...T.C......A.....C..T.C..TA....C..A..GG.......T..C Mouse .....A.....A...............T..T.T.....TA.T...C..T.....A.T..C..A..TG.......C..C Opossum ........T..T..C........T.....C.........A.T..T..TT.....A.T..C..A..A..A.....T..C Chicken ...G.A.....T......T.C.....C...C.......AA.T...A..T.CC.AA....C.....AG.......C..C Xenopus ...G.A........T...T.T..T...T....T.....TA.T..TA.TT.T...A.T..C.....A...........C Trout ...G.....C..........C.....T..CC.........CT..T......C.A.....C.....AG.A..T..T... Loach ...G.A.G.C.A..T.....C.....C..G..T.....T.CT........CC.A.....C.....AG..........C Carp ...G.A.G.C.A..............T..C..T.......CT.........C.A..T..C..A..A..A.....C..C Finback_Whale ATCTCTTCATGATGGAACTTCGGCTCCCTACTCGGCCTCTGCTTAATTATACAAATCCTAACAGGCCTATTCCTAGCA Blue_Whale .....C........A.................................G............................. Cow ..T..A........A..T.....T.....C..G..AA.....C....CC..........C.................. Rat .....A........A........T..T.....A..AG.A...C.C..AG..........C......T........... Mouse ..T..A........A.....T..G.....T..A..AG.....C....AG.C......A.T.....T..T...T....C Opossum .....AG.C........T..T..T..A...T.A..AG.G...C.......T........C......T.....T..... Chicken ......G.T.....A..T............T.A.CAG.....C.C..G.CC........C..C......C.A.....C Xenopus ..T..A....T...A...........T..T..A..GG....T......GCC......A.T.....AT.....T....T Trout .....AGTC..G..A.....T.....A.....A.....A..T...GC..CC.....T..T..C..G..C........C Loach .....AGT......A.....T..............A......C.G..C.CC...........T..A..G..TT..... Carp .....AG.......A.....T..A.....C..A..A..A..........CC.....TT....C..............C Finback_Whale ATACACTACACACCAGACACAACAACCGCCTTCTCATCAGTCACACACATCTGCCGAGACGTGAATTACGGCTGAATT Blue_Whale ........T.............T........................T..T...........A..C..T......G.. Cow ............T.C...........A..A.....C..T..T..C..T.................C...........C Rat ...........GT.T..T..C.T...A..A..............C.................A..C.........C.A Mouse ............T....T....T...A.....T........A........T..T........A........G...C.A Opossum .....T..T...T.T..T...TT......A..T........AG.C..T..T...........A..C.....A...C.. Chicken ..G.........G........T.CCTA........C..C..AG.C....CT.....GA....AC.A.........C.C Xenopus .....T..T...G........T.T.TA..............AG.C..T..T..TTTT.....T..C..T..A.T.T.A Trout ..G.....T..CT.C....TTT....A..T.....C..T..TTGC..............T..T.G..........C.C Loach ...........CT.T..T.TTT.T..A........C..C..TG.C.................C..C.....A...C.G Carp ...........CT......TTT.......A........T..T..C.................A............C.A Finback_Whale ATCCGATACCTACATGCAAATGGGGCTTCTATATTCTTCATCTGCCTCTACGCTCACATAGGACGAGGCCTATACTAC Blue_Whale ..T..G...T..........C..A..C..C.......................C.....G........T......... Cow .........A....C.....C..A.....A..G..T..T......T.A..TATG...G...........T....T... Rat ..............A..C..C..C..C..A.....T...........A.T.CTC..TG.G........A........T Mouse ........TA....C.....C..A..C..A.....T..T..T...T.A.T.CT...TG.C.........T....T..T Opossum ......A.TA.C.....C..C..A..A...........T..A.....T.T.CT...TG..........AA.T.....T Chicken .....GA.T..C..C.....C..C..C..AT.C...........TA...T.CT......C.................. Xenopus ..T..CA.T..C.....C.....ACTC..AT.C........T...A.....CT......C........GT.G...... Trout ..T...A..A.C.....C..C..A..A...T.C..T..T.....TA.T..TATA..T..C.CC.....A..T...... Loach ..T...A..A.C.....C..C..A..A..AT.C.....T............CT......C.CT........T.....T Carp .....TA.TG....C..C..C..A..A..AT.C........T...A.....ATA.....C.CC............... Finback_Whale GGCTCCTACGCCTTCCGAGAAACATGAAATATTGGAGTTATTCTACTATTCACAGTTATAGCCACCGCATTCGTAGGC Blue_Whale ......C....T..T......................................G..C........T............ Cow ..G..T...A.T..T.T.....................A..C..T..GC.......A........A.....TA....A Rat ..A......A.T....T......C.....C.....GA.C..C........TG....C.....A..T......A.G... Mouse ..A..A..TA.A..TAT......C.....C........AC.......G...G....C........A.....TA..... Opossum ..A..A..TCTT.A.AA........................C......C.A...........T..T........T... Chicken .........CT..A.AAG.....C.....C.CA.....A..C..C..CC.....C.C...........C..T..G... Xenopus .....T.T.TTA.ATAA..................T..G..C..C.....TTT.........T..A.....T.....A Trout .....G...CT..A.AA......C..G.....C......G.A..TT..C.TCTCAC....ATA..T..C..T...... Loach ..T..G...CTT.A.AA...G..C........C.....CG.CT..T.CC.TTT...A...ATA..A..C.....G..T Carp ..A..A...CTT.A.AA......C.....C.....T..AG.C..T...C.ACT...C..GATA..A..C.....T... Finback_Whale TACGTCCTGCCCTGAGGACAAATATCATTCTGAGGCGCAACTGTAATCACTAACCTCCTATCAGCAATCCCATACATT Blue_Whale .........................................C..C.....C........................... Cow ........A..A.......................A.....A..C.....C......T...................C Rat ..T..A..C..A.......................A..T..A.....T..A.....AT.......T.....T...... Mouse ........T..A.......................T..C..A..T..T..A..............C........T... Opossum .....A..A..A.................T...........A..T..T........AT....T..C........T..C Chicken ..T..T..C..A..G..C.................G..C..C..T.....A.....AT.C........T..C...... Xenopus ..T..T..A..A..............T..T.....G..T..A.....T.....T..T..T..T..T.AA..G.....C Trout ........C..G.......................G..C........T..A........C.....TG.A......G.A Loach ..T.....C..A..G..C........C...........C..A........C.....T..T..G..CG....C...G.A Carp ..T..T..T..A..............C..T........C..A........A...........T..CG.A........G Finback_Whale GGTACCACCCTAGTCGAATGAATCTGAGGCGGTTTCTCTGTAGATAAAGCAACACTAACACGCTTTTTTGCCTTTCAC Blue_Whale .....T.............................T.....G.......................C........C... Cow ..C..A.ATT......................A.....A.....C........C..T..C..A..C..C..T..C..T Rat ..G..T.......................A..C.....A.....C........C...........C..C..A..C... Mouse ..A..A.................T.....G..C.....A.....C.....C..CT.G..C..A..C..C..T..C... Opossum ..A.GT..A.....A........T.....A..A.....C..T........T........C..A........T...... Chicken ..ACA.........A..G...GC......G..A..T..A..C..C..CC....C..T..C..A..C..C..T..A... Xenopus ..A.A.GTA......C......GT.T...A..A..............C..C..TT....C..A..C..C..A...... Trout ..AGG.G.......AC.......T.....G..C.....C..T..C..C..C..T........A.....C......... Loach ..GGA..TG..G...C.............G..G.....A.....C..T.....CT.G.....G..C..C.....C... Carp ..AGA..TGT.....C.............T..G.....A.....C..T..............A..C..C..A..C... Finback_Whale TTTATCCTCCCCTTCATCATCCTAGCATTAGCAATTGTCCACCTTATTTTCCTTCACGAAACAGGATCCAACAACCCC Blue_Whale ..C..T..............TA.............C........C..C.............................. Cow ........T..A..T......A.....A.T..C..A........AC.A.....C...........C...........A Rat ..C........A.....T...GCC..CC.T........A..T...C.......C..............A..T...... Mouse ..C...T.A..A..T..T...GCG..CC.......C..T.....CC.C.....C..............A........A Opossum .....T..T..A........TT....TA...T.G.A..A..T...C.A..T.................A.G...T..A Chicken ..CC..........TGCA...GC..GTA.TA.T..CA.......C.CC.....A......T....C..A......... Xenopus ..CC....T..T..T..T..TGCC.G.GCTAGC...C....T...T.A..T..C........T.....A.CA.....A Trout ..CC.AT........G....TGC...CGCTA.GG.CC.T......C.G........T...........T..T.....T Loach ..CC.AT..........TG.TGCC...G.GA.T..CT.A.....AT.G...........G.....C............ Carp ..CC.A..A..A..TG.T..TGCC..CGC.A.C..CA.......GC.G.....C..............A........G Finback_Whale ACAGGCATCCCATCCGACATAGATAAAATCCCATTCCACCCCTACCACACAATTAAAGACATTCTAGGTGCCCTATTA Blue_Whale .....T........T..............T...............T......................C......C.. Cow .....A..TT.C..A...G....C.....................T.T..C.....G.....CT....G.....C... Rat .....AT.AAAC......GC...C..............T..A..TT.T............C.C.......TAT.TA.. Mouse .....AT.AAAC..A..TGC.........T.....T.........T.T.....C.....T..C......AT....A.C Opossum ......C.AGATC.AA..TC.........T...............T.T..C..A.....T..C.....CTTAT.CC.. Chicken CT.......T........TCT..C.....T.....T.....A...T..T.CT.C...........G..CTTAACTC.C Xenopus ..T..AT.AAAC..A...CC.......G.A..T........A...TT.T.TTAC......C..T....CTT...TA.T Trout G....G..TAAC..T..TGCT.........T..........T...TT.T..TAC.....TC.C.....ATT.G..GCC Loach G.....C.AAAC......GC..........T.C........A...TT.T.CTAC..G...C.C......TT.G..G.. Carp .TC..AC.AAAC..A...GC...C...G..T.T........G...TT.T..TAC......C.C..T..GTT.G..A.T Finback_Whale CTAATCCTAATCCTACTAATACTAACCCTATTCGCACCCGACCTACTTGGAGACCCAGACAACTATACCCCAGCAAAC Blue_Whale ..........C..........T....T.....T.........T....C.................C............ Cow .....T...GCT...A..C.....GTA.................C..C...........T.....C........C..T Rat T..C.AT..T.....A...CC...GTA......TTC..A........A..............T.....A..C..T... Mouse A..T..T....T..CA...CC...GTAT....TTTC..A...A....A.................C.TA.....T..T Opossum A....TA.T..T..T...TC....G.AA.....T....A..T..TT.A........T.......TC........T..T Chicken A..C..ACCCCAT.C....C....G........T.C...A....C..A...........A....TC............ Xenopus A..C.TAC.GCA..TACTC.C...G..A....TT.C..AA....TT.A..............T.T.........T..T Trout A..C.....GG....AC.TCCT..G.T..T..T.....AA.T..C..A..G...........T.T...G..T..C... Loach A..C.G...GGA..CACC.CC...G.A......T.C...A....C..G.....T.....A....TC........C... Carp A..C.....GCT..TAC.C.....G.A......T.C..TA..T....A...........A....TC.....C...... Finback_Whale CCACTCAGTACCCCAGCACACATTAAACCAGAATGGTATTTTCTATTCGCATACGCAATCCTACGATCAATCAACAAA Blue_Whale ................................G..A.....C.....T.....T........................ Cow .......AC..A..CC.T.....C.....C..G..A..C..CT....T............T................. Rat ..C....AC......C.C.....C...........A..C.....C..T..C.....T..T.....C..C..T...... Mouse .....A.AC......C.C..T........C.....A.....C.....T........C..T.....C........T... Opossum ..C..T.AC.....GC.T..T..C..G...........C........T..C..T..T...T................. Chicken .....AGTA.....CC....T..C...........A..............C..T..C........C..C......... Xenopus ..T..A.TC.....TC....T..............A..C..C........C.....T.....T.....C..A...... Trout ..C..AGTG......C.T..T........C.....A..C..C........T.................C........G Loach ..C..AGTC..G..CC.......C..G..C..G..A.....C........T..T..T..T...........T..T... Carp ..T..AGT...A...C.C.....C...........A..C..C.....T..C.....C..............T...... Finback_Whale CTAGGCGGAGTCTTAGCCCTACTACTCTCAATCCTAATCCTAGCCTTCATCCCAATACTCCACACATCCAATCAACGA Blue_Whale T...................................G.......TC.A.......................A...... Cow .....A.....AC........GCCT....T........T..T..TC.A.....CC....A.....C.....A...... Rat .....A..G...G........A.CT.A............T........C.A...T.C..G..T..C..A..A.....C Mouse .....A..T...C.....T..A.CT.A..T........TT.....C.A..A..TT.C..T..T..C..A..G...... Opossum .....A.....T.........T..GCA..C..TT..G.A..CCTAA.T.....T...T.A..T.....A.CC...... Chicken ..T..A..T..AC........GC.GC....G....C.....CTT.C.A.....CT.C.......A...T..A...... Xenopus ...........G.........G.C..A..C.........T.....C....A...T.............A..A...... Trout ..G..A.....AC.T.....TT..T....G.....TG....CATGG.TG....C..C..A.....T..T..A...... Loach T....A..C..TC....A..T...T.T..C...T..G.A...ATAG.TG.....G.C........G.....G..G... Carp ..C..A..T...C.T..A..C...T....C..T..GG.AT..ATAG.AG.A...C....A.....C..A..A...... Finback_Whale AGCATAATATTTCGACCCTTTAGCCAGTTCTTGTTCTGAGTCCTAGTCGCAGATCTACTAACCCTAACATGGATCGGC Blue_Whale ...........C..............A...C....T.....A..G........C.....C........G......... Cow ...........C.....AC.C.....A.G.C.A.......C......A.....C.....G..A..C.....A..T..A Rat ...T...C...C..C..AA.C.C...AA..C.T.A....A.......A..CA.C..C...GT.T.......A.....A Mouse ...C.......C..C..AA.C.CA..AA.T....A....A.......A..CA.C.....T.T.T....C..A..T..G Opossum .....GGC...C......A.CTCA..AACTC.A......A.AT..ACA..TA.C...A.T.T...G..C..A.....A Chicken .CA....CC..C.....AC.CTC...AAC.C.A......C.T.....A..CA.C..T..T.T......C..A.....A Xenopus ...C.T.....C.....A....CA..AA..A.A..T....C......T......AC.....T......C..A..T..A Trout G.AC.T.CC........AC.C.C...A.....A..T..G.C.T....A......A....C.T...C..C..A.....A Loach G.AC.T.CG..C.....AGC..C...A.....A......AC...C..T.....CA..A.T.T.........A..T..G Carp G.AC...C...C..C...A.C.C...A...C.A......AC......A..G..CA..A.T.T.........A..T..A Finback_Whale GGCCAACCAGTAGAACACCCCTACATAATTGTAGGCCAACTCGCATCCATCCTCTATTTCCTCTTAATTCTAGTATTA Blue_Whale ........C..............TG...............................C.................G... Cow ..A........C........A..T..C.CCA.C..A.....A.....TG....A..C..T...C.C..C.....GC.. Rat ....................A.TT..C...A.T..T.....A..C......AGT.....TTCAA.T..C..CA.TC.C Mouse ....................A.TT..T..CA.T........A..C......TCA..C...TCAA.C..CT..A.TC.T Opossum ..A..............A.....T..T.CCA.T......TGA..C.....TTC...C..TACTA.T..CA.CA.CC.T Chicken A.....................T...C..CA.T......A.A......C..TCT..C...AC.A.CC.A..TA.CC.C Xenopus ..T............G....T..T.CC..AA.T..A..GT.A..C..AG.AA.T..C...TCAA.CT..A.TA.TA.. Trout ...AT...T.............T...T...A.C..A...G....C..TG.AA.T..C...AC.A.CT.C.....TC.T Loach ..TAT......C..G.....A.....T...A.C..A...A.T.....T..T..T.....TGC.C..T.C..CA.T... Carp ...AT.........G..T....T...C...A.T..A...A.T......G....A..C...GCAC..T.C..CA.T..T Finback_Whale ATACCAGTAACTAGTCTTATCGAGAACAAACTTATATGA Blue_Whale .......................A..T............ Cow ......ACGG.CG.CACA.....A......T.AC..... Rat ......A.CT..G.AA..G.T..AG.....A.GT..... Mouse ......A.CT.AG.AA.......AG.....A.AC...AT Opossum .....TC..G.AG.AA.AC.A..A...T.TA.AC...TT Chicken T.C..CAC..TCG.AACAC.A..A......A.AC.C.AC Xenopus T.C...C.T.TAG..TGAG.A..A..T.....AT..... Trout TCC..CT..G.CG.CTGGGC...A.TT...GCCC.C... Loach ..C..CT.GG.AG.ATGGC.A..A..T...GCCC..... Carp ..G...C..G.AG.ATGGT.A..A..T...GCAC..... ; end;