#mega !Title Gamma fibrinogen data from M J. GATESY; !Format Datatype=nucleotide missing=? indel=- identical=.; [ M. Nei and S. Kumar (2000) Molecular Evolution and Phylogenetics. Oxford University Press. New York. Data for Example 9.1. ] #Dalli_sheep AAAGATTTGT AAGTTACTTT TAT----GTT TCTCTC--TG TGTTTGAACT GGACT----T GGGCAGAGAA #Moose AAAGATTTGT AAGTCGCTTT TAT----GTT TCTCTC--TG TGTTTGAACT GAACG----T GGGCAGAGGA #Giraffe AAAGATTCGT AAGTCGCTTT TAT----GTT TCTCTC--TG TGTTTGAACT GGACT----T GGGCAGAGGA #Chevrotain AAAGATTTGT AAGTAGCTTT CAT----ATT TCTCTC--TG TGTTTGAACT GTACT----T GGGCAGAGGA #Beluga_whale AAAGATTTGT AAGTAGTTTT TAT----GTT TCTCGC--TG TGTTTGCACT GGACG----T GGGCAGAGAA #Sperm_whale AAAGATTTGT AAGTAGTTTT TAT----GTT TCTCGC--TG TGTTTGCGCT GGATG----T GGGCAGAGAA #Finback_whale AAAGATTCGT AAGTAGTTTT TAT----GTT TCTCGC--TG TGTTTGCACT GGACG----T GGGCAGAGAA #Hippopotomus ?AAGATTTGT AAGTAGTTTT TACT---GTT TCTCGC--TG TGTTGGAACT GGACG----T GGGC?GAGGA #Pig AGAGATTTGT AAGTAGCTTT TAT----GTT TCTCGC--TG TGTTTGAGCT GGAGGGG--A GGGCAGAGGA #Peccary AGAGATTTGT GAGTAGCTTT TCT----GGT TCTCGT--GG CGTTTGAACT GGCGTGGGCG GGGCAGAGGA #Arabian_camel ?AAGATTTGT AAGTCGTTTT TTTGTTCGTT TCTGGC--TG TGTTTGAACT GGACA----G GGGTGGAGGA #Asiatic_tapir AAAGATTTGT AAGTAATTTT TAT----GTT TCTTGC--TG TGCTTGGACT GGAGA----G GGGCAGAGGC #Przewalski_horse AAAGATTTGT AAGTAATTTT TAT----GTT TCTCGC--TG TGTTTGAACT GGAAA----G GGGCAGAGGA #Spotted_hyena AAAGATTTGT AAGTAGTTTT CAT----GTT TCTCAT--TG TGTTTGAAGT GGGGA----G GGGCAGAGGA #Coyote ?AAGATTTGT AAGTAGTTTT CAT----GTT TCTCAC--TG CATGTGAAGT GGGGA----G GGGCAGAGGA #Human AAAGATTCGT AAGTAGTTTT TAT----GTT TCTCCCTTTG TGTGTGAACT GGAGA----G GGGCAGAGGA #Dalli_sheep ATTTTTATTC CTTATAAGAG ATTCTTTAGC AAATATCATT TGAC-AGTTT AGACTTTTT- ---------- #Moose AGTTTTATTC CTTATAAGAG ATTCTTTAGC AAATATCTTT TGGC-AGTTT AGACTTTTT- ---------- #Giraffe ATTTTTATTC CTTATAAGAG ATTCTTTAGC AAATATCATT TGGC-AGTTT AGACTTTTT- ---------- #Chevrotain A--------- --TAAAATAA ATTCTGTAGC AAATATCATT TGGC-AGTTT AGAGTTTTTT TT-------- #Beluga_whale A--------- --TAAAAGAA ATTCTCTCGC AAATATCATT TGGC-AGTTT AGACTTTTTT TTTT?----- #Sperm_whale A--------- --TATAAGAA ATTCTCTCGC AAATATCATT TGGC-AGTTT AGACTTTTTT TTTTT----- #Finback_whale A--------- --TAAAAGAA ATTCTCTCTC AAATACCATT TGGC-AGTTT AGACTTTTTT TT-------- #Hippopotomus A--------- --TGAAAGAA ATTCTCTCAC AAATATCATT TGGC-AGTTT AGACTTTTTT TTTTT?---- #Pig A--------- --TAAAAGAA ATTCTCTCGC AAATACCGTG TGGCCCATTT AGACTTTTTT T--------- #Peccary A--------- --TAGAAGAA ATTCTCTCGC GAACAGCATC TGGCCCGTTT AGACTTTTTT TTTTTTT?-- #Arabian_camel A--------- --TAAAAGGA ATTCTCTCGC AAAGACCATT TGGC-ATTTT AGACATT--- ---------- #Asiatic_tapir A--------- --TAAAAGGA GTTCTCTCAC ACATATAATT TGGC-?TTTT AAACTCTTTT TTT------- #Przewalski_horse A--------- --TGAAAGGA ATTCTCTCAT AAATATCATT TAGC-GTTTT AAACTCTTTT TTTTT??--- #Spotted_hyena A--------- --TAGAAGGA ATTCTCTCAC AAATATCATT TGGC-ATTGT AAACTT---- ---------- #Coyote A--------- ---------- ---------- ---TATCATT TGGC-ATTTT AAACTTTATT TTTTATTTAT #Human A--------- --TAGAAATA ATTCCCTCAT AAATATCATC TGGC-ACTTG TAACTTTTT- ---------- #Dalli_sheep ---------- ---------- --------AA AAACATAGTC TAGGTTTTAC CTGTTTTT-- ----ATTTAT #Moose ---------- ---------- --------AA AAACATAGTC TAGGTTTTAC CAATTTTT-- ----ATTAAT #Giraffe ---------- ---------- --------AA AAACATAGTC TAGG?TTTAC CTATTTTT-- ----ATTAAT #Chevrotain ---------- ---------- ------AAAA AAACATACTC TAGGTGTT-- ---------- -------AAG #Beluga_whale ---------- ---------- ---------- AAATGAAGTC TAGGTTTTAC CTATTTTG-- ----ATTAGT #Sperm_whale ---------- ---------- ---------- -AATGTAGTC TAGGTTTTAC CTATTTTG-- ----ATTAGG #Finback_whale ---------- ---------- --------AA AAACGTAGTC TAGGTTTTAC CTATTTTG-- ----ATTAGT #Hippopotomus ---------- ---------- ---------- AAACATAATC TAGGTTTTAC CTGTTTTT-- ----GTTAGT #Pig ---------- ---------- --------AA AAGCATAGTC TAGGTTTTGT CTATTTTTTT ---AAACAGT #Peccary ---------- ---------- ---------- AAGCATAGTC CAGGTTTTAT CTATTTTTT- ---CAAGAGT #Arabian_camel ---------- ---------A AAAAAAAAAA CGAAACAGTC CATGTTTTAT CTATTTTTTT TT?AACTGGT #Asiatic_tapir ---------- ---------- ---------- -AACATAGTC TACATTTTAG CTATTTTT-- ----ATTAAT #Przewalski_horse ---------- ---------- ---------- -AACATAGTC TACATTTTAG CTATTTTT-- ----ATTGAT #Spotted_hyena ---------- ---------- ---AAAAAAA AAACATAGTC TAGGTCTTAC CTATGTTT-- ----ATTAGT #Coyote TTACTTATTT TTCATTTTAA ACTTAAAAAA AAACATAATC GAGGTTTTAC CTGTTTTT-- ----ATTAAT #Human ---------- ---------- --------AA AAACATAGTC TAGGTTTTAC CTATTTTT-- ----CTTAAT #Dalli_sheep ---------- ---------- ---------- ---------- ---------- ----CAGGAT TTTTTAA-TC #Moose AGAT-CTCA- -TGTAGCTTT TT-------- ---------- ---------- --ATCAGAA- TTTTTAA-TC #Giraffe AGAT-CTCA- -TGTAGCTTT TT-------- ---------- ---------- --ATCAGGA- TTTTAAA-TC #Chevrotain AGAT-ACTA- -TGTGGCTTT TA-------- ---------- ---------- --ATTGGGA- TTTAAAAATC #Beluga_whale AGAT-CTTA- -TGTAGCTTT TT-------- ---------- ---------- --TTCAGGA- TTTTAAA-GC #Sperm_whale AGAT-CTTA- -TGTAGCTTT TT-------- ---------- ---------- --ATCAGGA- TTTTAAA-GC #Finback_whale AGAT-CTTA- -TGTAGCTTT TT-------- ---------- ---------- --ATCAGGA- TTTTTAA-TC #Hippopotomus GGAT-CTTA- -TGTAGCTTT TT-------- ---------- ---------- --ATCAG?A- TTTTTAA-TC #Pig AGAT-TTCA- -GGTAGCTTT TT-------- ---------- ---------- --ATGAAAA- AGTTTAA-TC #Peccary AGAT-TTTA- -GGTAGCTTT TT-------- ---------- ---------- --ACGAAAA- AATTTAA-GC #Arabian_camel GGAT-TTTA- -TGTAGCTTT TT-------- ---------- ---------- --GTCAAGA- ?TTTAAA-TC #Asiatic_tapir AGAT-TTTAA GTGTAGCTTT T--------- ---------- ---------- --ATCAAGA- TTTCTAA-TC #Przewalski_horse AGAT-TTTAA GTATAGCTTT C--------- ---------- ---------- --ATCAAGA- TTTCTAA-TC #Spotted_hyena AGATATTTA- -TGTAATTTT ---------A AAAATTTATC TAGTTTTTAA AAATCAAGA- CTTCTAA-TC #Coyote GGAT-TTTA- -TGCA?GTTT TTTTGTTTGT TTGTTTGTTT GTTTGTTTTT GAATCAAGA- TTTCTAA-TC #Human AGAT-TTTAA GAGTAGCATC T--------- ---------- ---------- --GTCTACA- TTTTTAA-TC #Dalli_sheep ACACT----- -GTTGTATTT TCAGGGTAGT TATTGCCCAA CTACCTGTGG AATTGCAGAC TTCCTGTCTA #Moose ACACTATT-- -GTTGTATTT TCAGGGTAGT TATTGCCCAA CTACCTGTGG AGTTGCAGAT TTCCTGTCTA #Giraffe ACACTATT-- -GTTGTATTT TCAGGGTAGT TATTGCCCAA CTACCTGTGG AGTTGCAGA? TTCCTGTCTA #Chevrotain ATACTATT-- ----GTATTT TCAGGGTAGT TACTGCCCAA CTACCTGTGG AATTGCAGAT TTCCTGTCTA #Beluga_whale ACTCTATT-- -ATTGTATTT TCAGGGTAGT TATTGCCCAA CTACCTGTGG AATTGCAGAT TTCCTGTCT? #Sperm_whale ACTCTATT-- -ATTGTATTT TCAGGGTAGT TATTGCCCAA CTACCTGTGG AATTGCAGAT TTCCTGTCTA #Finback_whale ACTCTATT-- -ATTGTATTT TCAGGGTAGT TATTGCCCAA CTACCTGTGG AATTGCAGAT TTCCTGTCTA #Hippopotomus ACTCTATT-- -GTTTTATTT TCAGGGTAGT TATTGCCCA? CTACCTGTGG AGTTGCAGAT TTCCTGTCTA #Pig ACTGTATTAA AATTATATTT TCAGGGTAGT TACTGCCCAA CTATGTGTGG GATCGCAGGT TTCCTGTCTA #Peccary ACGGTATTAA AATTACATTT TCAGGGTAGT TATTGCCCAA CTACGTGTGG GATCACAGAT TTCCTGTCTA #Arabian_camel ACTCTGTT-- -GTTGTACTT TCAGGGTAGT TACTGCCCGA CTACCTGTGG CATTGCGGAT TTCCTGTCTA #Asiatic_tapir ACTCTATT-- -GTTGTGTTT TCAGGGTAGT TATTGTCCTA CTACCTGTGG AATTGCAGAT TTCCTGTCGA #Przewalski_horse ACTCT----- -C?TGTATTT CCAGGGCAGT TATTGTCCGA CTACCTGTGG AATTGCAGAT TTCCTGTCGA #Spotted_hyena ACTCTA?TC- -GCTGCATTT TCAGGGTAGT TATTGCCCAA CTACCTGTGG AATTGCAGAT TTCCTATCTA #Coyote ACTCTATTC- -----TATTC TCAGGGTAGT TATTGCCCGA CTACCTGTGG AATTGCAGAC TTCCTGT?TA #Human ACT------- -GTTATATTT TCAGGGTAGT TATTGTCCAA CTACCTGTGG CATTGCAGAT TTCCTGTCTA #Dalli_sheep ATTACCAAAC CAGTGTAGAC AAGGATCTAC GAAATTTGGA AGGCATCTTC TATCAGGTTG AGAACAAAAC #Moose ATTACCAAAC CAGTGTAGAC AAAGATCTAC AAAATTTGGA AGGCATCTTA TATCAGGTTG AGAACAAAAC #Giraffe ATTACCAAAC CAGTGTAGAA ?AGGATCTAT ACCGTTTGGA AAGCGACTTA TATCAGGTTG AGAACAAAAC #Chevrotain ACTACCAAAC CAGCGTAGAC AAGGATCTAC ACAATTTGGA AAGCATCTTG TATCAGGTTG AGAACAAAAC #Beluga_whale CTTACCAAAC CAGTGTAGAC AAGGATCTAC AGAATTTGGA AGGCATCTTA CGTCAGGTTG AGAACAAGAC #Sperm_whale CTTACCAAAC CAATGTAGAC AAGGATCTAC AGAATTTGGA AGGCATCTTA CGTCAGGTTG AGAACAAGAC #Finback_whale CTTACCAAAC CAGTGTAGAC AAGGATCTAC AGAATTTGGA AGGAATCTTA CGTCAAGTTG AGAACAAGAC #Hippopotomus ATTACC?AAC CAGTGTAGAC AAGGATCTAC AGAATTTGGA AAGCATTGTT CATGAGGTTG AGAACAAGAC #Pig CTTACCAAAA CACTGTAGAG AAGGATCTAC AGAATTTGGA GGGCATCCTA CATCAAGTTG AGAACAAAAC #Peccary CTTACCAAAA CACTGTCGAG AAGGATCTGC AGAATTTGGA GGGCATCCTG CATCAAGTTG AGAACAAAAC #Arabian_camel CTTACCAAAA CAGCGTGGAC AAGGATCTGC AGACTTTGGA AGACATCCTA CATCAAGTTG AGAACAAAAC #Asiatic_tapir CTTACCAAAC C?GTGTAGAC AAGGATTTAC AGGTTTTGGA GGACATCTTA AATCAAGCTG AAAACAAAAC #Przewalski_horse ATTACCAAAC CAGTGTGGAC AAGGATCTAC AGGATTTTGA AGACATCTTA CATCGAGCTG AAAATCAAAC #Spotted_hyena CTTACCAAAC CGGCGTA?AC AATGATCTGC GGACTTTGGA GGATCTCTTA AGTGGGATTG AAAACAAAAC #Coyote CTTACCAGAC CGGAGTAGAC AATGAT?TGC AGGCTTTGGA AGACCTCCTA AGACGAATTG AAAACAAAAC #Human CTTATCAAAC CAAAGTAGAC AAGGATCTAC AGTCTTTGGA AGACATCTTA CATCAAGTTG AAAACAAAAC #Dalli_sheep ATCAGAAGCC ACAGAGCTGG TCAAAGCAAT CAAGATCAGC TATAACCCTG ATGAACCGTC AAAGCCAAGT #Moose ATCAGAAGCC AGAGAGCTGG TCAAAGCAAT CCAAATCAGC TATAACCCTG ATGAACCATC AAAGCCAAGT #Giraffe ATCAGAAGCC AAAGAGCTGG TCAAAGCAAT CCAAATCAGC TATAACCCTG ATGAACCATC AAAGCCAAGT #Chevrotain ATCAGAAGCC AGAGAGCTGG TCAAAGCAAT TCAAATCAGC TATAACCCTG ATGAAGCATC AAAGCCAAGT #Beluga_whale ATCAGAAGCC AGAGAGTTGG TCAAAGCAAT CCAGATCAGC TACCGCTCTG ATGGACCAGC AAAGCCAAGT #Sperm_whale ATCAGAAGCC AGAGAGTTGG TCAAAGAAAT CCAGATCAGC TACCGCTCTG ATGGACCAGC AAAGCCAAGT #Finback_whale ATCAGAAGCC AGAGAGTTGG TCAAAGCAAT CCAGATCAGC TACCGCTCTG ATGGACCAGC A?AGCCAAGT #Hippopotomus ATCAGAAGCC AGGGAGCTGG TCAAAGCAAT CCAAATCAGC TACAACCCTG ATGAACCAGA AAAGCCAAGT #Pig ATCGGAAGCC AGAGAGCTGA TCAAAGCCAT CCAGATCAGC TATAACCCTG AAGATCTATC AAAACCAGGT #Peccary ATCGGA?GCC AAAGAGCTGA TCAAAGCCAT CCAAATCAGC TATAATCCCG ATG?GCCATC AAAACCAGGT #Arabian_camel GACAGAGGCC AGAGAGCTGA TCAAAGCCGT CCAAATCAGC TATAACCCTG CCGAGCCGTC AAAGCCAAGT #Asiatic_tapir ATCAGAAGCC AAAGAACTGA TCAAAGCCAT CCAAGTCAGG TATAAACCTG ATGAACCAAC AAAGCCAGGT #Przewalski_horse CTCAGAAGCC GAACAACTGA TCCAAGCAAT CCGAACCAGC TATAATCCTG ATGAACCACC AAAGACAGGT #Spotted_hyena CTCAGAAGCC AAAGAATTGA TCAAATCAAT CCAAGTCAGC TACAATCCAA ATGAGCCACC AAAGCCAAGT #Coyote AGCAGAAGCC AAAGAAGTGA TCAAATCAAT CCAAATCACC TATAATCCCG ATGAGCCACC AAAGCCAAGT #Human ATCAGAAGTC AAACAGCTGA TAAAAGCAAT CCAACTCACT TATAATCCTG ATGAATCATC AAAACCAAGT #Dalli_sheep GAGACTCTAA CTGCCACTGA CTGAGAGAG- -------TCA TCTATGAAGT GCTTTTGC?G TTATTT-TAG #Moose GAGAATCTAA CCCCCACTGC CTGAGAAAG- -------TCA TCTATGAAGT TCTTTTGCTG TTATTT-CAG #Giraffe GAGAATCTAA CTGCCACTGA CTGAGAAAG- -------TCA TCTATGAAGT TCTTCTGCTG TTATTT-TAG #Chevrotain GAGAATCTAA CCACCACTGA CTGAGAAAG- -------TCA TCTATGAAGT TCTCTTGTTG ---TTT-TAG #Beluga_whale GAGAATCTAA CCACCACTGA CTGAGAACT- -------TCA TCTGTGAAGT TCTTTTGCTG TAATTT-CAG #Sperm_whale GAGAATCTAA CCACCACTGA CTGAGAACT- -------TCA ACTGTGAAGT TCTTTTGCTG TTATTT-CAG #Finback_whale GAGAATCTAA CCACCACTGA CTGAGAACT- -------TCA TCTGTGAAGT TCTTTTGCTG TTATTT-CAG #Hippopotomus GAGAATCTCA C-ACTGCTGA TTGAGAACT- -------TCA TGTGTGAAGT TCTTTTGCTG TTATTT-C?G #Pig GAGAATCTGA CCAGCGCTGC CTGAGAAAA- -------TCA TCTGTGGGGT TCTTTTGCTG TTGTTG-TAG #Peccary GAGAATCTGA CCAGCAATGC CTGAGAAAAA -------TCA TCTGGGAGTT TCTTTTGCTG CTGTTG-TAG #Arabian_camel GAGATTCTAA CCACCCCCGA CTGGGAAAA- -------TCA TCTG?GAAGT TCTTTTGCTG TGGTTT-TAG #Asiatic_tapir GAGAAACTGA ATACCACTGA GTGAGAAAA- -------TAA CTTGTGAAGT TCTTTTGCTG TTGTTT-TAG #Przewalski_horse GAGAAACGGA ATACCACCGA CGGAGAAAA- -------TAA TTTGTGGATT TCTTTTGCTG TTGTTT-TAG #Spotted_hyena GAGAAACTAA ATACTACTGA CCGAGAAAA- -------TGA TTTGTGAGGT TGTTTT?CTG TTGTTT-CAG #Coyote GAGAAACAAA ATACTGCCGG CTGAGACAA- -------TGA TTCATGACGT TCTTTTG?TG CCATTGCCAG #Human GAGAAAATAA AGACTACTGA CCAAAAAATA ATAATAATAA TCTGTGAAGT TCTTTTGCTG TTGTTT-TAG #Dalli_sheep TGGTTCTGTT TGCTTATGTA T--TTT?ATA TCTCTGATCC CATATTACAG GTAACATAGA GAGTGCTACC #Moose TGGTTCTGTT TGCTTATGTA T--TTTTATA TCTCTGATCC CATATTACAG ATAACATAGA GAGTGCTACC #Giraffe TGGTTCTGTT TGCTTATGTA T--TTTTATA TCTCTGATCC CGTATTACAG GTCACATAGA GAGTGCTACC #Chevrotain TGGTTCTATT TACTTATGCA TTTTTTTATG TCTCTGACCC CACATTACAG ACAAGATAGA GAGTGCTACC #Beluga_whale TGGTTCTGTT TGTTCATGTA T--TTTTATG TCTCTGATCC CATGTTACAG ATGGGATAGA AAGTGCTACC #Sperm_whale TGGTTCTGTT TGTTTATGTA T--TTTTATG TCTTTGATCC CATGTTACAG GTGGGATAGA GAGTGCTACC #Finback_whale TGGTTCTGTT TGTTTACGTA T--TTTTATG TCTCTGATCC CATGTTACAG ATGGGATAGA CAGTGCTACC #Hippopotomus TGGTTCTGTT TGCTTACGTA T--TTTTATG TCTCTGACCC CATATTACAG GTAGGATAGA GAGTGCTACC #Pig TGGTTTTGTT GGCTTGAGT? T-TTTTTATG ?CTCTGACCC CATCTTATAG ATAGGATACA AAGTGCCACC #Peccary TGGTTCCCTT GACTTGAGTG T-TCTTTATG TCTCTGATCC CCTGTTACAG ACAGGATACA AAGTGCCACC #Arabian_camel CAGTTCTGTT TGCTTAAGTA T--TTTTATA TCTCTGACCC CATATTACAG GTAGGATAGA GAGTGCTACC #Asiatic_tapir TGGTTCTAGT TACCTAAGTA A--TTTTATG TCTCTAATTC CGTATTACAG GCGGAATAGA TAGTGCTACT #Przewalski_horse TTGTTGTATT TGTCTGAGCA A--GTTTATG TCTCTGATCC CATATTACAG GCAGAATAGA TGCTGCTACT #Spotted_hyena TGGCTCCATT TGCTTAAGTC C--TTTTGTG TCTCTGATCC TGCGTTACAG ACACGATAGT GAGTGCTACC #Coyote TGGTTCCATT TGCTTATGCC T--TTTTATG TCTCTGATCC CATATTACAG ACAGGGTCGT GGGTGCTACC #Human TTGTTCTATT TGCTTAAGGA T--TTTTATG TCTCTGATCC TATATTACAG ATATGATAGA CGCTGCTACT #Dalli_sheep AAGAATTACA AGAGAATGAT G #Moose AAGAATTCCA AGAGAATGAT G #Giraffe AAGAATTCCA AGAGAATGAT G #Chevrotain AGGAATTCCA AGAAAATGAT G #Beluga_whale AAGATTTCCA AGAAAGTGTT G #Sperm_whale AAGAATTCCA AGAAAATGTT G #Finback_whale AAGATTTCCA AGAAAATGTT G #Hippopotomus AAGAATTCCA AGAAAATG?T G #Pig AAGGAGTCCA AGAAAATGTT G #Peccary AAAGATTCCA AGAAAATGTT G #Arabian_camel AAGGATTTCA AGAAAATGAT G #Asiatic_tapir AGGGAGTCCA AGAAAATGCT G #Przewalski_horse AGAGAGTCCA AGAAAATGAT G #Spotted_hyena AAGGATTCCA AGAAAATGAT G #Coyote A?GGACTCCA AGAAAATGAT G #Human TTGAAGTCCA GGATAATGTT A